Session information

Session information of the Asc-Seurat’s environment (Docker image v2.2)

sessionInfo()

R version 4.0.1 (2020-06-06) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux bookworm/Matrix products: default

BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:

LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:

parallel stats4 grid stats graphics grDevices utils datasets methods base

other attached packages:

glmGamPoi_1.2.0 dynfeature_1.0.0 dynwrap_1.2.2 dynplot_1.1.2 topGO_2.42.0 SparseM_1.81 GO.db_3.12.1 AnnotationDbi_1.52.0 graph_1.68.0 biomaRt_2.46.3 multtest_2.46.0 slingshot_1.8.0 princurve_2.1.6 SingleCellExperiment_1.12.0 SummarizedExperiment_1.20.0 Biobase_2.50.0 GenomicRanges_1.42.0 GenomeInfoDb_1.26.7 IRanges_2.24.1 S4Vectors_0.28.1 BiocGenerics_0.36.1 MatrixGenerics_1.2.1 matrixStats_0.61.0 ComplexHeatmap_2.6.2 vroom_1.5.7 scales_1.1.1 hdf5r_1.3.5 DT_0.20 shinycssloaders_1.0.0 ggthemes_4.2.4 future_1.23.0 rclipboard_0.1.5 shinyFeedback_0.4.0 shinyWidgets_0.6.4 shiny_1.7.1 sctransform_0.3.3 reactable_0.2.3 circlize_0.4.13 patchwork_1.1.1 SeuratObject_4.0.4 Seurat_4.1.0 forcats_0.5.1 stringr_1.4.0 dplyr_1.0.7 purrr_0.3.4 readr_2.1.2 tidyr_1.2.0 tibble_3.1.6 ggplot2_3.3.5 tidyverse_1.3.1

loaded via a namespace (and not attached):

rappdirs_0.3.3 scattermore_0.7 GA_3.2.2 bit64_4.0.5 irlba_2.3.5 DelayedArray_0.16.3 data.table_1.14.2 rpart_4.1-15 RCurl_1.98-1.5 generics_0.1.2 cowplot_1.1.1 RSQLite_2.2.9 RANN_2.6.1 carrier_0.1.0 bit_4.0.4 tzdb_0.2.0 spatstat.data_2.1-2 xml2_1.3.3 lubridate_1.8.0 httpuv_1.6.5 assertthat_0.2.1 viridis_0.6.2 fontawesome_0.2.2 hms_1.1.1 jquerylib_0.1.4 promises_1.2.0.1 fansi_1.0.2 progress_1.2.2 dbplyr_2.1.1 readxl_1.3.1 igraph_1.2.11 DBI_1.1.2 htmlwidgets_1.5.4 spatstat.geom_2.3-1 dyndimred_1.0.4 ellipsis_0.3.2 backports_1.4.1 RcppParallel_5.1.5 deldir_1.0-6 vctrs_0.3.8 remotes_2.4.2 Cairo_1.5-14 ROCR_1.0-11 abind_1.4-5 cachem_1.0.6 withr_2.4.3 ggforce_0.3.3 prettyunits_1.1.1 goftest_1.2-3 cluster_2.1.0 ape_5.6-1 lazyeval_0.2.2 crayon_1.4.2 babelwhale_1.0.3 pkgconfig_2.0.3 tweenr_1.0.2 nlme_3.1-148 rlang_1.0.0 globals_0.14.0 lifecycle_1.0.1 miniUI_0.1.1.1 BiocFileCache_1.14.0 modelr_0.1.8 cellranger_1.1.0 rprojroot_2.0.2 polyclip_1.10-0 lmtest_0.9-39 Matrix_1.4-0 zoo_1.8-9 reprex_2.0.1 ggridges_0.5.3 GlobalOptions_0.1.2 processx_3.5.2 png_0.1-7 viridisLite_0.4.0 rjson_0.2.21 bitops_1.0-7 KernSmooth_2.23-17 blob_1.2.2 shape_1.4.6 parallelly_1.30.0 memoise_2.0.1 magrittr_2.0.2 plyr_1.8.6 ica_1.0-2 zlibbioc_1.36.0 compiler_4.0.1 RColorBrewer_1.1-2 clue_0.3-60 fitdistrplus_1.1-6 cli_3.1.1 XVector_0.30.0 listenv_0.8.0 pbapply_1.5-0 ps_1.6.0 MASS_7.3-51.6 mgcv_1.8-31 tidyselect_1.1.1 stringi_1.7.6 yaml_2.2.2 askpass_1.1 ggrepel_0.9.1 sass_0.4.0 tools_4.0.1 future.apply_1.8.1 rstudioapi_0.13 foreach_1.5.1 gridExtra_2.3 farver_2.1.0 Rtsne_0.15 ggraph_2.0.5 proxyC_0.2.4 digest_0.6.29 dynparam_1.0.2 Rcpp_1.0.8 broom_0.7.12 later_1.3.0 RcppAnnoy_0.0.19 httr_1.4.2 colorspace_2.0-2 ranger_0.13.1 rvest_1.0.2 XML_3.99-0.8 fs_1.5.2 tensor_1.5 reticulate_1.24 splines_4.0.1 uwot_0.1.11 lmds_0.1.0 spatstat.utils_2.3-0 graphlayouts_0.8.0 plotly_4.10.0 xtable_1.8-4 jsonlite_1.7.3 tidygraph_1.2.0 R6_2.5.1 pillar_1.7.0 htmltools_0.5.2 mime_0.12 glue_1.6.1 fastmap_1.1.0 codetools_0.2-16 utf8_1.2.2 lattice_0.20-41 bslib_0.3.1 spatstat.sparse_2.1-0 curl_4.3.2 leiden_0.3.9 openssl_1.4.6 survival_3.1-12 desc_1.4.0 dynutils_1.0.6 munsell_0.5.0 GetoptLong_1.0.5 GenomeInfoDbData_1.2.4 iterators_1.0.13 haven_2.4.3 reshape2_1.4.4 gtable_0.3.0 spatstat.core_2.3-2